Profile — Yudai Iyoda

Yudai Iyoda / 伊與田裕大

Master’s student, Graduate School of Science, The University of Tokyo
Research fields: Universality biology, Biophysics, Astrobiology
Keywords: genome-scale metabolic models, bow-tie structures, Bayesian inference of metabolic systems, large language models, clinical reasoning

Career Publications Research Presentations Activities

Career

2024.4 — now Graduate School of Science, The University of Tokyo (Master's program)
2020.4 — 2024.3 The University of Tokyo, Faculty of Science, Department of Bioinformatics

Publications

Under preparation

Research

2024.4 — now Computational exploration of possible metabolic networks (supervisor: Chikara Furusawa)
2023.6 — 2024.3 Mathematical modeling of glycolytic oscillations using intracellular lactate sensors (undergraduate research)
2021.5 — 2023.3 Study on mechanisms of bow-tie structure emergence in metabolic networks (independent research)

Presentations (non-peer-reviewed)

Exploring potential metabolic networks of life using chemical reaction databases
Yudai Iyoda, Chikara Furusawa, Yusuke Himeoka
Poster, 1st India-Japan Workshop on Physical Aspects of Living Systems, Feb. 19-21, 2025, Tokyo University of Science

Exploring potential metabolic networks of life using chemical reaction databases
Yudai Iyoda, Chikara Furusawa, Yusuke Himeoka
Poster, Public Symposium "ERATO Fukatsu Symbiosis Evolution Project", Feb. 12, 2025, The University of Tokyo

Exploring potential metabolic networks of life using chemical reaction databases
伊與田裕大, 古澤力, 姫岡優介
Poster, "Creating Cells" Workshop 17.0, Nov. 11–12, 2024, Osaka University

Exploring potential metabolic networks of life using chemical reaction databases
伊與田裕大, 古澤力, 姫岡優介
Poster, Gakuhen A "Transcendental Molecular Systems" 4th Regional Meeting, Sep. 26-28, 2024, Hokkaido

Mechanisms of bow-tie structure formation in artificial metabolic networks
伊與田裕大, 古澤力, 姫岡優介
Oral, The Physical Society of Japan 79th Annual Meeting, Sep. 16-19, 2024, Hokkaido University

Appearance and adaptive properties of bow-tie structures from simple metabolic networks
Yudai Iyoda, Chikara Furusawa, Yusuke Himeoka
Poster, IUPAB/Biophysical Society of Japan Joint Meeting, Jun. 24–28, 2024, Kyoto

Imaging and modeling of glycolytic oscillations
Saaya Hario (presenter), Yudai Iyoda (collaborator)
Poster, 21st International Union for Pure and Applied Biophysics, Jun. 24–28, 2024, Kyoto

Appearance and adaptive properties of bow-tie structures from simple metabolic networks
Yudai Iyoda, Chikara Furusawa, Yusuke Himeoka
Poster, GSB Symposium of Molecular Systems Biology 2024, May 28-29, National Taiwan University

Appearance and adaptive properties of bow-tie structures from simple metabolic networks
伊與田裕大, 古澤力, 姫岡優介
Oral, Workshop on Universality in Biology, Feb. 20-21, 2024, Yugawara

Conditions for the emergence of Bow-tie metabolic networks
伊與田裕大, 古澤力, 姫岡優介
Oral, The Physical Society of Japan 2022 Autumn Meeting, Sep. 12-15, 2022, Tokyo Institute of Technology

Metabolic patterns of primitive life in extrasolar systems
伊與田裕大
Poster, Keio Astrobiology Camp 2022, Mar. 17-19, online

Activities